Savant Genome Browser 1.3.1
Savant Genome Browser 1.3.1 Full Download Summary
File size: 17.40 MB
Platform: WinXP, Windows Vista, Windows Vista x64, Windows 7, Windows 7 x64
License: Freeware
Price: FREE
Downloads: Total: 103 | This Month: 1
Released: 2010-09-01
Publisher: Computational Biology Lab
Publisher URL: http://compbio.cs.toronto.edu/savant/
Savant Genome Browser 1.3.1 Full Description
Savant Genome Browser is a handy, easy to use, Java based visualization application specially designed for genomic data. It was primarily developed for visualizing high throughput (aka next generation) sequencing data, although it can be used to visualize virtually any genome-based sequence, point, interval, or continuous dataset.
FEATURES:
· FASTA, BED, SAM/BAM, WIG, GFF, and virtually any tab delimited text file containing positional annotations
· Fast data access
· Scalable to very large input files
· Small memory footprint
· Zooming, panning, and seeking using range controls or keyboard and mouse
· Dockable modules supporting show/hide, rearrangement, maximize, float, close
· Compact view of sequence, point, interval, and continuous tracks
· Multiple display modes for specific track types
· Works on Windows, Linux, Mac, and any other platform having support for Java Virtual Machine
· Plugin framework allows access to data, tracks, and UI for extensive customization
· Bookmarking of locations
· Track locking
· Novel representation of paired-end reads making structural variations easy to identify
Release notes:
New Release· new mode for gene display (squish)
· better handling of Savant file version
· FASTA formatter accepts blank lines
· bug fix for rendering of BAM reads
[ Savant Genome Browser full changelog ]
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