BioRuby 2.0.0

BioRuby Full Download Summary

BioRubyComponents & LibrariesWindows Vista, Windows Vista x64, Windows 7, Windows 7 x64, Windows 8, Windows 8 x64, Windows 10, Windows 10 x64, Linux, Mac OS X

User Rating: 1.3 (4 votes)

  • File size: 1.34 MB
  • Platform: Windows Vista, Windows Vista x64, Windows 7, Windows 7 x64, Windows 8, Windows 8 x64, Windows 10, Windows 10 x64, Linux, Mac OS X
  • License: Open Source
  • Price: FREE
  • Downloads: Total: 318 | This Month: 0
  • Released: Jun 14, 2019
  • Publisher: BioRuby Team
  • Publisher URL: http://bioruby.open-bio.org/

BioRuby 2.0.0 Full Description

Open source bioinformatics library for Ruby

BioRuby is a free library that provides an integrated environment in bioinformatics for the Ruby language.

This BioRuby project is supported by University of Tokyo (Human Genome Center), Kyoto University (Bioinformatics Center) and the Open Bio Foundation.

* BioRuby comes with a comprehensive set of free development tools and libraries for bioinformatics and molecular biology, for the Ruby programming language. BioRuby has components for sequence analysis, pathway analysis, protein modelling and phylogenetic analysis; it supports many widely used data formats and provides easy access to databases, external programs and public web services, including BLAST, KEGG, GenBank, MEDLINE and GO.
* BioRuby comes with a tutorial, documentation and an interactive environment, which can be used in the shell, and in the web browser.
* BioRuby is supported by the Open Bioinformatics Foundation or O|B|F.

Requirements:

RUBY

Release notes:

New Release
Features moved to separete gems
Some features are moved to separate gems because of reducing complexity and/or to avoid external library dependency of BioRuby core.

BioRuby Shell is moved to “bio-shell”
BioRuby Shell is split to “bio-shell” gem.

Executable files are moved to “bio-executables”
To avoid unexpected loading of executable files by some Rails software, all executable commands are moved to “bio-executables” gem (except the “bioruby” command that is included in the above “bio-shell” gem).

Fast BLAST XML result parser by using Expat XML Parser is moved to “bio-blast-xmlparser”
Fast BLAST XML result parser by using Expat XML Parser is split to “bio-blast-xmlparser” gem, because of external C library dependency. Please install “bio-blast-xmlparser” gem if possible. If it is installed, BioRuby automatically use it.

Bio::PhyloXML is moved to “bioruby-phyloxml”
Bio::PhyloXML is split to “bioruby-phyloxml” gem.
[ BioRuby full changelog ]

BioRuby 2.0.0 Bookmark

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